J3_8E48_006

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

8E48|1|I|U|2334, 8E48|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E48_006 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.1931

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8E48|1|I|C|2295
8E48|1|I|U|2296
8E48|1|I|A|2297
8E48|1|I|A|2298
8E48|1|I|U|2299
*
8E48|1|I|A|2317
8E48|1|I|G|2318
8E48|1|I|G|2319
8E48|1|I|U|2320
8E48|1|I|U|2321
8E48|1|I|A|2322
8E48|1|I|G|2323
*
8E48|1|I|C|2332
8E48|1|I|A|2333
8E48|1|I|U|2334
8E48|1|I|A|2335
8E48|1|I|A|2336
8E48|1|I|G|2337

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA