J3_8E48_009

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CGGCCGUAG*CGC*GGAACUG

Length

19 nucleotides

Bulged bases

8E48|1|J|U|14, 8E48|1|J|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E48|1|J|C|8
8E48|1|J|G|9
8E48|1|J|G|10
8E48|1|J|C|11
8E48|1|J|C|12
8E48|1|J|G|13
8E48|1|J|U|14
8E48|1|J|A|15
8E48|1|J|G|16
*
8E48|1|J|C|68
8E48|1|J|G|69
8E48|1|J|C|70
*
8E48|1|J|G|106
8E48|1|J|G|107
8E48|1|J|A|108
8E48|1|J|A|109
8E48|1|J|C|110
8E48|1|J|U|111
8E48|1|J|G|112

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA