J3_8E48_013

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8E48|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E48_013 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0972

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8E48|1|I|G|297
8E48|1|I|G|298
8E48|1|I|A|299
8E48|1|I|A|300
8E48|1|I|G|301
*
8E48|1|I|C|316
8E48|1|I|G|317
8E48|1|I|C|318
8E48|1|I|G|319
8E48|1|I|A|320
8E48|1|I|U|321
8E48|1|I|A|322
8E48|1|I|C|323
8E48|1|I|A|324
8E48|1|I|G|325
*
8E48|1|I|C|337
8E48|1|I|G|338
8E48|1|I|U|339
8E48|1|I|A|340
8E48|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4