J3_8EIU_020

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EIU_020 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.08

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8EIU|1|a|U|1344
8EIU|1|a|C|1345
8EIU|1|a|G|1346
8EIU|1|a|A|1347
8EIU|1|a|C|1348
8EIU|1|a|C|1349
*
8EIU|1|a|G|1382
8EIU|1|a|A|1383
8EIU|1|a|A|1384
8EIU|1|a|A|1385
*
8EIU|1|a|U|1402
8EIU|1|a|A|1403

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23