3D structure

PDB id
8EIU (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with A-loop mutations U2554C and U2555C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
GCCGUAG*CGC*GGAAC
Length
15 nucleotides
Bulged bases
8EIU|1|b|U|14, 8EIU|1|b|A|108
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8EIU_026 not in the Motif Atlas
Homologous match to J3_5J7L_049
Geometric discrepancy: 0.0659
The information below is about J3_5J7L_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89095.1
Basepair signature
cWW-F-F-F-tHS-F-cWW-F-cWW
Number of instances in this motif group
1

Unit IDs

8EIU|1|b|G|10
8EIU|1|b|C|11
8EIU|1|b|C|12
8EIU|1|b|G|13
8EIU|1|b|U|14
8EIU|1|b|A|15
8EIU|1|b|G|16
*
8EIU|1|b|C|68
8EIU|1|b|G|69
8EIU|1|b|C|70
*
8EIU|1|b|G|106
8EIU|1|b|G|107
8EIU|1|b|A|108
8EIU|1|b|A|109
8EIU|1|b|C|110

Current chains

Chain b
5S rRNA

Nearby chains

Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain n
50S ribosomal protein L18
Chain u
50S ribosomal protein L25
Chain v
50S ribosomal protein L27

Coloring options:


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