J3_8EIU_029

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8EIU|1|A|U|1212, 8EIU|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EIU_029 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1166

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8EIU|1|A|C|990
8EIU|1|A|U|991
8EIU|1|A|U|992
8EIU|1|A|G|993
8EIU|1|A|A|994
8EIU|1|A|C|995
8EIU|1|A|A|996
8EIU|1|A|U|997
*
8EIU|1|A|A|1044
8EIU|1|A|C|1045
8EIU|1|A|A|1046
8EIU|1|A|G|1047
*
8EIU|1|A|C|1210
8EIU|1|A|U|1211
8EIU|1|A|U|1212
8EIU|1|A|A|1213
8EIU|1|A|C|1214
8EIU|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14