3D structure

PDB id
8EKB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
8EKB|1|1a|A|975, 8EKB|1|1a|G|976, 8EKB|1|1a|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8EKB_022 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0588
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8EKB|1|1a|U|955
8EKB|1|1a|U|956
8EKB|1|1a|U|957
8EKB|1|1a|A|958
8EKB|1|1a|A|959
8EKB|1|1a|U|960
8EKB|1|1a|U|961
8EKB|1|1a|C|962
*
8EKB|1|1a|G|973
8EKB|1|1a|A|974
8EKB|1|1a|A|975
8EKB|1|1a|G|976
8EKB|1|1a|A|977
8EKB|1|1a|A|978
8EKB|1|1a|C|979
8EKB|1|1a|C|980
8EKB|1|1a|U|981
8EKB|1|1a|U|982
8EKB|1|1a|A|983
8EKB|1|1a|C|984
*
8EKB|1|1a|G|1221
8EKB|1|1a|G|1222
8EKB|1|1a|C|1223
8EKB|1|1a|G|1224
8EKB|1|1a|A|1225

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1j
30S ribosomal protein S10
Chain 1m
30S ribosomal protein S13
Chain 1n
30S ribosomal protein S14 type Z
Chain 1s
30S ribosomal protein S19

Coloring options:


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