3D structure

PDB id
8EKB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CC*GUGGAU*AAUCG
Length
13 nucleotides
Bulged bases
8EKB|1|2A|G|2833, 8EKB|1|2A|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8EKB_041 not in the Motif Atlas
Homologous match to J3_7RQB_014
Geometric discrepancy: 0.0508
The information below is about J3_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_95952.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8EKB|1|2A|C|2814
8EKB|1|2A|C|2815
*
8EKB|1|2A|G|2831
8EKB|1|2A|U|2832
8EKB|1|2A|G|2833
8EKB|1|2A|G|2834
8EKB|1|2A|A|2835
8EKB|1|2A|U|2836
*
8EKB|1|2A|A|2882
8EKB|1|2A|A|2883
8EKB|1|2A|U|2884
8EKB|1|2A|C|2885
8EKB|1|2A|G|2886

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2E
50S ribosomal protein L3
Chain 2R
50S ribosomal protein L17

Coloring options:


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