J3_8EKB_050

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKB_050 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1785

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8EKB|1|2a|C|990
8EKB|1|2a|U|991
8EKB|1|2a|U|992
8EKB|1|2a|G|993
*
8EKB|1|2a|C|1045
8EKB|1|2a|A|1046
8EKB|1|2a|G|1047
*
8EKB|1|2a|C|1210
8EKB|1|2a|U|1211
8EKB|1|2a|U|1212
8EKB|1|2a|A|1213
8EKB|1|2a|C|1214
8EKB|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z