J3_8EKB_051

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EKB|1|2a|G|1002
8EKB|1|2a|G|1003
8EKB|1|2a|A|1004
8EKB|1|2a|A|1005
8EKB|1|2a|C|1006
*
8EKB|1|2a|G|1023
8EKB|1|2a|G|1024
8EKB|1|2a|U|1025
8EKB|1|2a|G|1026
8EKB|1|2a|C|1027
8EKB|1|2a|C|1028
*
8EKB|1|2a|G|1033
8EKB|1|2a|G|1034
8EKB|1|2a|A|1035
8EKB|1|2a|G|1036
8EKB|1|2a|C|1037
8EKB|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains