J3_8EKC_003

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8EKC|1|A|U|686, 8EKC|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKC_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0878

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8EKC|1|A|U|683
8EKC|1|A|G|684
8EKC|1|A|A|685
8EKC|1|A|U|686
8EKC|1|A|C|687
8EKC|1|A|U|688
8EKC|1|A|A|689
*
8EKC|1|A|U|773
8EKC|1|A|G|774
8EKC|1|A|G|775
*
8EKC|1|A|C|791
8EKC|1|A|A|792
8EKC|1|A|A|793
8EKC|1|A|A|794

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2