J3_8EKC_010
3D structure
- PDB id
- 8EKC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8EKC|1|A|A|2518, 8EKC|1|A|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EKC_010 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.1204
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8EKC|1|A|C|2517
8EKC|1|A|A|2518
8EKC|1|A|U|2519
8EKC|1|A|C|2520
*
8EKC|1|A|G|2545
8EKC|1|A|U|2546
8EKC|1|A|A|2547
*
8EKC|1|A|U|2561
8EKC|1|A|U|2562
8EKC|1|A|U|2563
8EKC|1|A|A|2564
8EKC|1|A|A|2565
8EKC|1|A|A|2566
8EKC|1|A|G|2567
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L14
Coloring options: