J3_8EKC_027

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8EKC|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKC_027 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0802

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8EKC|1|A|G|297
8EKC|1|A|G|298
8EKC|1|A|A|299
8EKC|1|A|A|300
8EKC|1|A|G|301
*
8EKC|1|A|C|316
8EKC|1|A|G|317
8EKC|1|A|C|318
8EKC|1|A|G|319
8EKC|1|A|A|320
8EKC|1|A|U|321
8EKC|1|A|A|322
8EKC|1|A|C|323
8EKC|1|A|A|324
8EKC|1|A|G|325
*
8EKC|1|A|C|337
8EKC|1|A|G|338
8EKC|1|A|U|339
8EKC|1|A|A|340
8EKC|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24