J3_8EMM_011

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EMM_011 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0526

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8EMM|1|a|C|698
8EMM|1|a|A|699
8EMM|1|a|G|700
*
8EMM|1|a|C|732
8EMM|1|a|G|733
8EMM|1|a|A|734
8EMM|1|a|A|735
8EMM|1|a|C|736
*
8EMM|1|a|G|760
8EMM|1|a|A|761
8EMM|1|a|U|762
8EMM|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2