J3_8EMM_030
3D structure
- PDB id
- 8EMM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 8EMM|1|a|U|72, 8EMM|1|a|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EMM_030 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0511
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8EMM|1|a|A|56
8EMM|1|a|C|57
*
8EMM|1|a|G|70
8EMM|1|a|A|71
8EMM|1|a|U|72
8EMM|1|a|A|73
8EMM|1|a|A|74
8EMM|1|a|G|75
8EMM|1|a|C|76
*
8EMM|1|a|G|110
8EMM|1|a|A|111
8EMM|1|a|U|112
8EMM|1|a|U|113
8EMM|1|a|U|114
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain x
- 50S ribosomal protein L29
Coloring options: