J3_8EUB_003

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UAG*CGUA(OMG)C*GUCGA

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|A1|U|829
8EUB|1|A1|A|830
8EUB|1|A1|G|831
*
8EUB|1|A1|C|863
8EUB|1|A1|G|864
8EUB|1|A1|U|865
8EUB|1|A1|A|866
8EUB|1|A1|OMG|867
8EUB|1|A1|C|868
*
8EUB|1|A1|G|891
8EUB|1|A1|U|892
8EUB|1|A1|C|893
8EUB|1|A1|G|894
8EUB|1|A1|A|895

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A

Chain Aj

60S ribosomal protein L37-A