J3_8EUB_042

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8EUB|1|B5|U|238, 8EUB|1|B5|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|B5|A|213
8EUB|1|B5|G|214
8EUB|1|B5|A|215
8EUB|1|B5|U|216
8EUB|1|B5|A|217
8EUB|1|B5|A|218
8EUB|1|B5|A|219
8EUB|1|B5|A|220
8EUB|1|B5|A|221
8EUB|1|B5|A|222
8EUB|1|B5|U|223
8EUB|1|B5|C|224
8EUB|1|B5|A|225
8EUB|1|B5|A|226
8EUB|1|B5|U|227
8EUB|1|B5|G|228
*
8EUB|1|B5|C|237
8EUB|1|B5|U|238
8EUB|1|B5|C|239
8EUB|1|B5|U|240
8EUB|1|B5|U|241
8EUB|1|B5|U|242
8EUB|1|B5|G|243
*
8EUB|1|B5|C|250
8EUB|1|B5|A|251
8EUB|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A