J3_8EVQ_041

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8EVQ|1|B5|A|217, 8EVQ|1|B5|A|226, 8EVQ|1|B5|U|227, 8EVQ|1|B5|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVQ|1|B5|A|213
8EVQ|1|B5|G|214
8EVQ|1|B5|A|215
8EVQ|1|B5|U|216
8EVQ|1|B5|A|217
8EVQ|1|B5|A|218
8EVQ|1|B5|A|219
8EVQ|1|B5|A|220
8EVQ|1|B5|A|221
8EVQ|1|B5|A|222
8EVQ|1|B5|U|223
8EVQ|1|B5|C|224
8EVQ|1|B5|A|225
8EVQ|1|B5|A|226
8EVQ|1|B5|U|227
8EVQ|1|B5|G|228
*
8EVQ|1|B5|C|237
8EVQ|1|B5|U|238
8EVQ|1|B5|C|239
8EVQ|1|B5|U|240
8EVQ|1|B5|U|241
8EVQ|1|B5|U|242
8EVQ|1|B5|G|243
*
8EVQ|1|B5|C|250
8EVQ|1|B5|A|251
8EVQ|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A