J3_8EVR_035

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8EVR|1|B5|A|225, 8EVR|1|B5|A|226, 8EVR|1|B5|U|227, 8EVR|1|B5|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|B5|A|213
8EVR|1|B5|G|214
8EVR|1|B5|A|215
8EVR|1|B5|U|216
8EVR|1|B5|A|217
8EVR|1|B5|A|218
8EVR|1|B5|A|219
8EVR|1|B5|A|220
8EVR|1|B5|A|221
8EVR|1|B5|A|222
8EVR|1|B5|U|223
8EVR|1|B5|C|224
8EVR|1|B5|A|225
8EVR|1|B5|A|226
8EVR|1|B5|U|227
8EVR|1|B5|G|228
*
8EVR|1|B5|C|237
8EVR|1|B5|U|238
8EVR|1|B5|C|239
8EVR|1|B5|U|240
8EVR|1|B5|U|241
8EVR|1|B5|U|242
8EVR|1|B5|G|243
*
8EVR|1|B5|C|250
8EVR|1|B5|A|251
8EVR|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A