J3_8EVS_016

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CCAG*CAGC*GUGGG

Length

13 nucleotides

Bulged bases

8EVS|1|EC|A|6896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|EC|C|6894
8EVS|1|EC|C|6895
8EVS|1|EC|A|6896
8EVS|1|EC|G|6897
*
8EVS|1|EC|C|6917
8EVS|1|EC|A|6918
8EVS|1|EC|G|6919
8EVS|1|EC|C|6920
*
8EVS|1|EC|G|6933
8EVS|1|EC|U|6934
8EVS|1|EC|G|6935
8EVS|1|EC|G|6936
8EVS|1|EC|G|6937

Current chains

Chain EC

TSV IRES

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

RPL11A isoform 1

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BP

RPS15 isoform 1

Chain DC

Elongation factor 2