J3_8EVS_035

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8EVS|1|B5|A|226, 8EVS|1|B5|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|B5|A|213
8EVS|1|B5|G|214
8EVS|1|B5|A|215
8EVS|1|B5|U|216
8EVS|1|B5|A|217
8EVS|1|B5|A|218
8EVS|1|B5|A|219
8EVS|1|B5|A|220
8EVS|1|B5|A|221
8EVS|1|B5|A|222
8EVS|1|B5|U|223
8EVS|1|B5|C|224
8EVS|1|B5|A|225
8EVS|1|B5|A|226
8EVS|1|B5|U|227
8EVS|1|B5|G|228
*
8EVS|1|B5|C|237
8EVS|1|B5|U|238
8EVS|1|B5|C|239
8EVS|1|B5|U|240
8EVS|1|B5|U|241
8EVS|1|B5|U|242
8EVS|1|B5|G|243
*
8EVS|1|B5|C|250
8EVS|1|B5|A|251
8EVS|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A