3D structure

PDB id
8EVT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UAG*CGUA(OMG)C*GUCGA
Length
14 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8EVT|1|A1|U|829
8EVT|1|A1|A|830
8EVT|1|A1|G|831
*
8EVT|1|A1|C|863
8EVT|1|A1|G|864
8EVT|1|A1|U|865
8EVT|1|A1|A|866
8EVT|1|A1|OMG|867
8EVT|1|A1|C|868
*
8EVT|1|A1|G|891
8EVT|1|A1|U|892
8EVT|1|A1|C|893
8EVT|1|A1|G|894
8EVT|1|A1|A|895

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain AR
60S ribosomal protein L19-A
Chain Ag
60S ribosomal protein L34-A
Chain Aj
60S ribosomal protein L37-A
Chain Ap
60S ribosomal protein L43-A

Coloring options:

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