J3_8EVT_025

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CA*UAACUGAAU*AGGAAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|A1|C|1631
8EVT|1|A1|A|1632
*
8EVT|1|A1|U|1641
8EVT|1|A1|A|1642
8EVT|1|A1|A|1643
8EVT|1|A1|C|1644
8EVT|1|A1|U|1645
8EVT|1|A1|G|1646
8EVT|1|A1|A|1647
8EVT|1|A1|A|1648
8EVT|1|A1|U|1649
*
8EVT|1|A1|A|1806
8EVT|1|A1|G|1807
8EVT|1|A1|G|1808
8EVT|1|A1|A|1809
8EVT|1|A1|A|1810
8EVT|1|A1|G|1811

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AZ

60S ribosomal protein L27-A

Chain Ag

60S ribosomal protein L34-A