J3_8EWB_008
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8EWB|1|A1|G|2549, 8EWB|1|A1|U|2550, 8EWB|1|A1|U|2551, 8EWB|1|A1|A|2554, 8EWB|1|A1|U|2558, 8EWB|1|A1|U|2559, 8EWB|1|A1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EWB_008 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1435
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8EWB|1|A1|A|2529
8EWB|1|A1|G|2530
8EWB|1|A1|C|2531
8EWB|1|A1|U|2532
*
8EWB|1|A1|A|2547
8EWB|1|A1|C|2548
8EWB|1|A1|G|2549
8EWB|1|A1|U|2550
8EWB|1|A1|U|2551
8EWB|1|A1|C|2552
8EWB|1|A1|U|2553
8EWB|1|A1|A|2554
8EWB|1|A1|G|2555
8EWB|1|A1|C|2556
8EWB|1|A1|A|2557
8EWB|1|A1|U|2558
8EWB|1|A1|U|2559
8EWB|1|A1|C|2560
8EWB|1|A1|A|2561
8EWB|1|A1|A|2562
8EWB|1|A1|G|2563
*
8EWB|1|A1|U|2578
8EWB|1|A1|G|2579
8EWB|1|A1|A|2580
8EWB|1|A1|U|2581
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AX
- 60S ribosomal protein L25
- Chain AZ
- 60S ribosomal protein L27-A
- Chain Ac
- 60S ribosomal protein L30
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
Coloring options: