J3_8EWB_009
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCCU*A(OMG)GUGCC
- Length
- 23 nucleotides
- Bulged bases
- 8EWB|1|A1|C|2797
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWB|1|A1|G|2651
8EWB|1|A1|U|2652
8EWB|1|A1|C|2653
*
8EWB|1|A1|G|2754
8EWB|1|A1|C|2755
8EWB|1|A1|C|2756
8EWB|1|A1|U|2757
8EWB|1|A1|A|2758
8EWB|1|A1|U|2759
8EWB|1|A1|C|2760
8EWB|1|A1|G|2761
8EWB|1|A1|A|2762
8EWB|1|A1|U|2763
8EWB|1|A1|C|2764
8EWB|1|A1|C|2765
8EWB|1|A1|U|2766
*
8EWB|1|A1|A|2792
8EWB|1|A1|OMG|2793
8EWB|1|A1|G|2794
8EWB|1|A1|U|2795
8EWB|1|A1|G|2796
8EWB|1|A1|C|2797
8EWB|1|A1|C|2798
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: