J3_8EWB_023

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCAGU*ACAGC*GUGGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|EC|C|6894
8EWB|1|EC|C|6895
8EWB|1|EC|A|6896
8EWB|1|EC|G|6897
8EWB|1|EC|U|6898
*
8EWB|1|EC|A|6916
8EWB|1|EC|C|6917
8EWB|1|EC|A|6918
8EWB|1|EC|G|6919
8EWB|1|EC|C|6920
*
8EWB|1|EC|G|6933
8EWB|1|EC|U|6934
8EWB|1|EC|G|6935
8EWB|1|EC|G|6936
8EWB|1|EC|G|6937

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

RPL11A isoform 1

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain DC

Elongation factor 2