J3_8EWB_038

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

8EWB|1|A3|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EWB_038 not in the Motif Atlas

Homologous match to J3_8C3A_059

Geometric discrepancy: 0.0771

The information below is about J3_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8EWB|1|A3|C|9
8EWB|1|A3|C|10
8EWB|1|A3|A|11
8EWB|1|A3|U|12
8EWB|1|A3|A|13
8EWB|1|A3|U|14
*
8EWB|1|A3|A|66
8EWB|1|A3|G|67
*
8EWB|1|A3|U|111
8EWB|1|A3|G|112

Current chains

Chain A3

5s rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AD

RPL5 isoform 1

Chain AI

RPL10 isoform 1

Chain AT

60S ribosomal protein L21-A