J3_8EWB_042

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|B5|A|213
8EWB|1|B5|G|214
8EWB|1|B5|A|215
8EWB|1|B5|U|216
8EWB|1|B5|A|217
8EWB|1|B5|A|218
8EWB|1|B5|A|219
8EWB|1|B5|A|220
8EWB|1|B5|A|221
8EWB|1|B5|A|222
8EWB|1|B5|U|223
8EWB|1|B5|C|224
8EWB|1|B5|A|225
8EWB|1|B5|A|226
8EWB|1|B5|U|227
8EWB|1|B5|G|228
*
8EWB|1|B5|C|237
8EWB|1|B5|U|238
8EWB|1|B5|C|239
8EWB|1|B5|U|240
8EWB|1|B5|U|241
8EWB|1|B5|U|242
8EWB|1|B5|G|243
*
8EWB|1|B5|C|250
8EWB|1|B5|A|251
8EWB|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A