J3_8EWC_023

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CCAG*CAGC*GUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|EC|C|6894
8EWC|1|EC|C|6895
8EWC|1|EC|A|6896
8EWC|1|EC|G|6897
*
8EWC|1|EC|C|6917
8EWC|1|EC|A|6918
8EWC|1|EC|G|6919
8EWC|1|EC|C|6920
*
8EWC|1|EC|G|6933
8EWC|1|EC|U|6934
8EWC|1|EC|G|6935
8EWC|1|EC|G|6936

Current chains

Chain EC

internal ribosome entry site (IRES)

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BP

RPS15 isoform 1