J3_8EWC_024
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 8EWC|1|A1|U|117, 8EWC|1|A1|G|120, 8EWC|1|A1|A|121, 8EWC|1|A1|U|147, 8EWC|1|A1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWC|1|A1|C|113
8EWC|1|A1|A|114
8EWC|1|A1|A|115
8EWC|1|A1|A|116
8EWC|1|A1|U|117
8EWC|1|A1|U|118
8EWC|1|A1|U|119
8EWC|1|A1|G|120
8EWC|1|A1|A|121
8EWC|1|A1|A|122
8EWC|1|A1|A|123
8EWC|1|A1|U|124
*
8EWC|1|A1|A|144
8EWC|1|A1|G|145
8EWC|1|A1|U|146
8EWC|1|A1|U|147
8EWC|1|A1|G|148
8EWC|1|A1|U|149
8EWC|1|A1|A|150
8EWC|1|A1|A|151
8EWC|1|A1|U|152
8EWC|1|A1|U|153
8EWC|1|A1|U|154
8EWC|1|A1|G|155
8EWC|1|A1|G|156
8EWC|1|A1|A|157
8EWC|1|A1|G|158
*
8EWC|1|A1|C|263
8EWC|1|A1|G|264
8EWC|1|A1|A|265
8EWC|1|A1|A|266
8EWC|1|A1|G|267
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AG
- 60S ribosomal protein L8-A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Ai
- 60S ribosomal protein L36-A
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