J3_8EWC_034
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCCUGA*UGCAGGCCACCAU
- Length
- 35 nucleotides
- Bulged bases
- 8EWC|1|A1|C|1556, 8EWC|1|A1|A|1558, 8EWC|1|A1|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWC|1|A1|A|1537
8EWC|1|A1|G|1538
8EWC|1|A1|A|1539
8EWC|1|A1|U|1540
8EWC|1|A1|G|1541
8EWC|1|A1|G|1542
*
8EWC|1|A1|C|1551
8EWC|1|A1|G|1552
8EWC|1|A1|U|1553
8EWC|1|A1|U|1554
8EWC|1|A1|U|1555
8EWC|1|A1|C|1556
8EWC|1|A1|A|1557
8EWC|1|A1|A|1558
8EWC|1|A1|A|1559
8EWC|1|A1|G|1560
8EWC|1|A1|G|1561
8EWC|1|A1|C|1562
8EWC|1|A1|C|1563
8EWC|1|A1|U|1564
8EWC|1|A1|G|1565
8EWC|1|A1|A|1566
*
8EWC|1|A1|U|1572
8EWC|1|A1|G|1573
8EWC|1|A1|C|1574
8EWC|1|A1|A|1575
8EWC|1|A1|G|1576
8EWC|1|A1|G|1577
8EWC|1|A1|C|1578
8EWC|1|A1|C|1579
8EWC|1|A1|A|1580
8EWC|1|A1|C|1581
8EWC|1|A1|C|1582
8EWC|1|A1|A|1583
8EWC|1|A1|U|1584
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AX
- 60S ribosomal protein L25
- Chain Aj
- 60S ribosomal protein L37-A
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