J3_8EWC_042

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8EWC|1|B5|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|A|213
8EWC|1|B5|G|214
8EWC|1|B5|A|215
8EWC|1|B5|U|216
8EWC|1|B5|A|217
8EWC|1|B5|A|218
8EWC|1|B5|A|219
8EWC|1|B5|A|220
8EWC|1|B5|A|221
8EWC|1|B5|A|222
8EWC|1|B5|U|223
8EWC|1|B5|C|224
8EWC|1|B5|A|225
8EWC|1|B5|A|226
8EWC|1|B5|U|227
8EWC|1|B5|G|228
*
8EWC|1|B5|C|237
8EWC|1|B5|U|238
8EWC|1|B5|C|239
8EWC|1|B5|U|240
8EWC|1|B5|U|241
8EWC|1|B5|U|242
8EWC|1|B5|G|243
*
8EWC|1|B5|C|250
8EWC|1|B5|A|251
8EWC|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A