J3_8EWC_045

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGG*UUGUC*GAUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|U|1293
8EWC|1|B5|G|1294
8EWC|1|B5|G|1295
*
8EWC|1|B5|U|1302
8EWC|1|B5|U|1303
8EWC|1|B5|G|1304
8EWC|1|B5|U|1305
8EWC|1|B5|C|1306
*
8EWC|1|B5|G|1318
8EWC|1|B5|A|1319
8EWC|1|B5|U|1320
8EWC|1|B5|A|1321
8EWC|1|B5|A|1322

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BC

RPS2 isoform 1

Chain BR

40S ribosomal protein S17-A

Chain BV

40S ribosomal protein S21-A