J3_8FC3_027

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC3_027 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0721

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8FC3|1|2a|C|936
8FC3|1|2a|A|937
8FC3|1|2a|A|938
8FC3|1|2a|G|939
*
8FC3|1|2a|C|1344
8FC3|1|2a|U|1345
8FC3|1|2a|A|1346
8FC3|1|2a|G|1347
8FC3|1|2a|U|1348
8FC3|1|2a|A|1349
8FC3|1|2a|A|1350
*
8FC3|1|2a|U|1372
8FC3|1|2a|G|1373
8FC3|1|2a|A|1374
8FC3|1|2a|A|1375
8FC3|1|2a|U|1376
8FC3|1|2a|A|1377
8FC3|1|2a|C|1378
8FC3|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9