3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
8FC3|1|2a|A|975, 8FC3|1|2a|G|976, 8FC3|1|2a|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FC3_029 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0685
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8FC3|1|2a|U|955
8FC3|1|2a|U|956
8FC3|1|2a|U|957
8FC3|1|2a|A|958
8FC3|1|2a|A|959
8FC3|1|2a|U|960
8FC3|1|2a|U|961
8FC3|1|2a|C|962
*
8FC3|1|2a|G|973
8FC3|1|2a|A|974
8FC3|1|2a|A|975
8FC3|1|2a|G|976
8FC3|1|2a|A|977
8FC3|1|2a|A|978
8FC3|1|2a|C|979
8FC3|1|2a|C|980
8FC3|1|2a|U|981
8FC3|1|2a|U|982
8FC3|1|2a|A|983
8FC3|1|2a|C|984
*
8FC3|1|2a|G|1221
8FC3|1|2a|G|1222
8FC3|1|2a|C|1223
8FC3|1|2a|G|1224
8FC3|1|2a|A|1225

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2j
30S ribosomal protein S10
Chain 2m
30S ribosomal protein S13
Chain 2n
30S ribosomal protein S14 type Z
Chain 2s
30S ribosomal protein S19
Chain 2y
Ribosome-associated inhibitor A

Coloring options:


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