J3_8FC4_003

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC4_003 not in the Motif Atlas

Homologous match to J3_7RQB_006

Geometric discrepancy: 0.1454

The information below is about J3_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC4|1|1A|G|1055
8FC4|1|1A|G|1056
8FC4|1|1A|A|1057
*
8FC4|1|1A|U|1081
8FC4|1|1A|U|1082
8FC4|1|1A|U|1083
8FC4|1|1A|A|1084
8FC4|1|1A|A|1085
8FC4|1|1A|A|1086
8FC4|1|1A|G|1087
*
8FC4|1|1A|C|1102
8FC4|1|1A|A|1103
8FC4|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36