J3_8FC4_022

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGA*UUUAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

8FC4|1|2A|U|1083, 8FC4|1|2A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC4|1|2A|G|1055
8FC4|1|2A|G|1056
8FC4|1|2A|A|1057
*
8FC4|1|2A|U|1081
8FC4|1|2A|U|1082
8FC4|1|2A|U|1083
8FC4|1|2A|A|1084
8FC4|1|2A|A|1085
8FC4|1|2A|A|1086
8FC4|1|2A|G|1087
8FC4|1|2A|A|1088
8FC4|1|2A|G|1089
8FC4|1|2A|U|1090
8FC4|1|2A|G|1091
*
8FC4|1|2A|C|1100
8FC4|1|2A|U|1101
8FC4|1|2A|C|1102
8FC4|1|2A|A|1103
8FC4|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16