J3_8FC4_032

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

8FC4|1|2a|A|975, 8FC4|1|2a|G|976, 8FC4|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC4_032 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0849

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8FC4|1|2a|U|955
8FC4|1|2a|U|956
8FC4|1|2a|U|957
8FC4|1|2a|A|958
8FC4|1|2a|A|959
8FC4|1|2a|U|960
8FC4|1|2a|U|961
8FC4|1|2a|C|962
*
8FC4|1|2a|G|973
8FC4|1|2a|A|974
8FC4|1|2a|A|975
8FC4|1|2a|G|976
8FC4|1|2a|A|977
8FC4|1|2a|A|978
8FC4|1|2a|C|979
8FC4|1|2a|C|980
8FC4|1|2a|U|981
8FC4|1|2a|U|982
8FC4|1|2a|A|983
8FC4|1|2a|C|984
*
8FC4|1|2a|G|1221
8FC4|1|2a|G|1222
8FC4|1|2a|C|1223
8FC4|1|2a|G|1224
8FC4|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2y

Ribosome-associated inhibitor A