3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
8FC5|1|1a|A|975, 8FC5|1|1a|G|976, 8FC5|1|1a|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FC5_013 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0521
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8FC5|1|1a|U|955
8FC5|1|1a|U|956
8FC5|1|1a|U|957
8FC5|1|1a|A|958
8FC5|1|1a|A|959
8FC5|1|1a|U|960
8FC5|1|1a|U|961
8FC5|1|1a|C|962
*
8FC5|1|1a|G|973
8FC5|1|1a|A|974
8FC5|1|1a|A|975
8FC5|1|1a|G|976
8FC5|1|1a|A|977
8FC5|1|1a|A|978
8FC5|1|1a|C|979
8FC5|1|1a|C|980
8FC5|1|1a|U|981
8FC5|1|1a|U|982
8FC5|1|1a|A|983
8FC5|1|1a|C|984
*
8FC5|1|1a|G|1221
8FC5|1|1a|G|1222
8FC5|1|1a|C|1223
8FC5|1|1a|G|1224
8FC5|1|1a|A|1225

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1j
30S ribosomal protein S10
Chain 1m
30S ribosomal protein S13
Chain 1n
30S ribosomal protein S14 type Z
Chain 1s
30S ribosomal protein S19
Chain 1u
30S ribosomal protein Thx
Chain 1y
Ribosome-associated inhibitor A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2901 s