J3_8FC5_015

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

8FC5|1|1a|G|1024

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC5_015 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.1822

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC5|1|1a|G|1002
8FC5|1|1a|G|1003
8FC5|1|1a|A|1004
8FC5|1|1a|A|1005
8FC5|1|1a|C|1006
*
8FC5|1|1a|G|1023
8FC5|1|1a|G|1024
8FC5|1|1a|U|1025
8FC5|1|1a|G|1026
8FC5|1|1a|C|1027
8FC5|1|1a|C|1028
*
8FC5|1|1a|G|1033
8FC5|1|1a|G|1034
8FC5|1|1a|A|1035
8FC5|1|1a|G|1036
8FC5|1|1a|C|1037
8FC5|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains