J3_8FC5_045

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

8FC5|1|1A|A|2388, 8FC5|1|1A|U|2390, 8FC5|1|1A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC5_045 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.0491

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8FC5|1|1A|G|2282
8FC5|1|1A|C|2283
8FC5|1|1A|C|2284
*
8FC5|1|1A|G|2384
8FC5|1|1A|C|2385
8FC5|1|1A|C|2386
8FC5|1|1A|U|2387
8FC5|1|1A|A|2388
8FC5|1|1A|G|2389
8FC5|1|1A|U|2390
8FC5|1|1A|G|2391
8FC5|1|1A|A|2392
8FC5|1|1A|A|2393
8FC5|1|1A|C|2394
8FC5|1|1A|C|2395
*
8FC5|1|1A|G|2421
8FC5|1|1A|A|2422
8FC5|1|1A|U|2423
8FC5|1|1A|C|2424
8FC5|1|1A|A|2425
8FC5|1|1A|A|2426
8FC5|1|1A|C|2427

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15

Chain 1Z

50S ribosomal protein L25