J3_8FC5_061

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

AGGAG*CUUUAAAGAGUG*CUCACU

Length

23 nucleotides

Bulged bases

8FC5|1|2A|U|1083, 8FC5|1|2A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC5|1|2A|A|1054
8FC5|1|2A|G|1055
8FC5|1|2A|G|1056
8FC5|1|2A|A|1057
8FC5|1|2A|G|1058
*
8FC5|1|2A|C|1080
8FC5|1|2A|U|1081
8FC5|1|2A|U|1082
8FC5|1|2A|U|1083
8FC5|1|2A|A|1084
8FC5|1|2A|A|1085
8FC5|1|2A|A|1086
8FC5|1|2A|G|1087
8FC5|1|2A|A|1088
8FC5|1|2A|G|1089
8FC5|1|2A|U|1090
8FC5|1|2A|G|1091
*
8FC5|1|2A|C|1100
8FC5|1|2A|U|1101
8FC5|1|2A|C|1102
8FC5|1|2A|A|1103
8FC5|1|2A|C|1104
8FC5|1|2A|U|1105

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36