J3_8FIZ_009

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

8FIZ|1|AA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_009 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1993

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FIZ|1|AA|U|1073
8FIZ|1|AA|G|1074
*
8FIZ|1|AA|U|1083
8FIZ|1|AA|G|1084
8FIZ|1|AA|U|1085
8FIZ|1|AA|U|1086
8FIZ|1|AA|G|1087
*
8FIZ|1|AA|C|1098
8FIZ|1|AA|G|1099
8FIZ|1|AA|C|1100
8FIZ|1|AA|A|1101
8FIZ|1|AA|A|1102

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AJ

30S ribosomal protein S2

Chain AP

30S ribosomal protein S5