J3_8FIZ_013

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8FIZ|1|BA|U|686, 8FIZ|1|BA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_013 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1007

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8FIZ|1|BA|U|683
8FIZ|1|BA|G|684
8FIZ|1|BA|A|685
8FIZ|1|BA|U|686
8FIZ|1|BA|C|687
8FIZ|1|BA|U|688
8FIZ|1|BA|A|689
*
8FIZ|1|BA|U|773
8FIZ|1|BA|G|774
8FIZ|1|BA|G|775
*
8FIZ|1|BA|C|791
8FIZ|1|BA|A|792
8FIZ|1|BA|A|793
8FIZ|1|BA|A|794

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BN

50S ribosomal protein L34