J3_8FIZ_029

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAUGGCG*CGUCGUAGUCCGGAUUG*CAUGAAGUCG

Length

35 nucleotides

Bulged bases

8FIZ|1|AA|A|1238, 8FIZ|1|AA|U|1240, 8FIZ|1|AA|A|1299, 8FIZ|1|AA|G|1304, 8FIZ|1|AA|G|1305, 8FIZ|1|AA|U|1307, 8FIZ|1|AA|U|1335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FIZ|1|AA|C|1237
8FIZ|1|AA|A|1238
8FIZ|1|AA|A|1239
8FIZ|1|AA|U|1240
8FIZ|1|AA|G|1241
8FIZ|1|AA|G|1242
8FIZ|1|AA|C|1243
8FIZ|1|AA|G|1244
*
8FIZ|1|AA|C|1293
8FIZ|1|AA|G|1294
8FIZ|1|AA|U|1295
8FIZ|1|AA|C|1296
8FIZ|1|AA|G|1297
8FIZ|1|AA|U|1298
8FIZ|1|AA|A|1299
8FIZ|1|AA|G|1300
8FIZ|1|AA|U|1301
8FIZ|1|AA|C|1302
8FIZ|1|AA|C|1303
8FIZ|1|AA|G|1304
8FIZ|1|AA|G|1305
8FIZ|1|AA|A|1306
8FIZ|1|AA|U|1307
8FIZ|1|AA|U|1308
8FIZ|1|AA|G|1309
*
8FIZ|1|AA|C|1328
8FIZ|1|AA|A|1329
8FIZ|1|AA|U|1330
8FIZ|1|AA|G|1331
8FIZ|1|AA|A|1332
8FIZ|1|AA|A|1333
8FIZ|1|AA|G|1334
8FIZ|1|AA|U|1335
8FIZ|1|AA|C|1336
8FIZ|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S19

Chain AE

30S ribosomal protein S13

Chain AL

30S ribosomal protein S7

Chain AV

50S ribosomal protein L31