J3_8FKP_007

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8FKP|1|L3|G|219, 8FKP|1|L3|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKP|1|L3|C|196
8FKP|1|L3|A|197
8FKP|1|L3|A|198
8FKP|1|L3|G|199
*
8FKP|1|L3|C|215
8FKP|1|L3|C|216
8FKP|1|L3|C|217
8FKP|1|L3|A|218
8FKP|1|L3|G|219
8FKP|1|L3|C|220
8FKP|1|L3|C|221
8FKP|1|L3|C|222
8FKP|1|L3|G|223
8FKP|1|L3|U|224
8FKP|1|L3|G|225
8FKP|1|L3|G|226
8FKP|1|L3|A|227
8FKP|1|L3|C|228
*
8FKP|1|L3|G|240
8FKP|1|L3|G|241
8FKP|1|L3|U|242
8FKP|1|L3|A|243
8FKP|1|L3|G|244

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain NQ

WD repeat-containing protein 74

Chain SA

60S ribosomal protein L4

Chain SZ

Nucleolar protein 16