J3_8FKS_004

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CA*UUGAAAAG*CG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKS_004 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.0907

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8FKS|1|L1|C|19
8FKS|1|L1|A|20
*
8FKS|1|L3|U|380
8FKS|1|L3|U|381
8FKS|1|L3|G|382
8FKS|1|L3|A|383
8FKS|1|L3|A|384
8FKS|1|L3|A|385
8FKS|1|L3|A|386
8FKS|1|L3|G|387
*
8FKS|1|L3|C|414
8FKS|1|L3|G|415

Current chains

Chain L1

5.8S rRNA

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4