J3_8FKS_008

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8FKS|1|L3|G|219, 8FKS|1|L3|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKS|1|L3|C|196
8FKS|1|L3|A|197
8FKS|1|L3|A|198
8FKS|1|L3|G|199
*
8FKS|1|L3|C|215
8FKS|1|L3|C|216
8FKS|1|L3|C|217
8FKS|1|L3|A|218
8FKS|1|L3|G|219
8FKS|1|L3|C|220
8FKS|1|L3|C|221
8FKS|1|L3|C|222
8FKS|1|L3|G|223
8FKS|1|L3|U|224
8FKS|1|L3|G|225
8FKS|1|L3|G|226
8FKS|1|L3|A|227
8FKS|1|L3|C|228
*
8FKS|1|L3|G|240
8FKS|1|L3|G|241
8FKS|1|L3|U|242
8FKS|1|L3|A|243
8FKS|1|L3|G|244

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4

Chain SZ

Nucleolar protein 16