J3_8FKU_010

3D structure

PDB id

8FKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8FKU|1|L3|A|218, 8FKU|1|L3|G|219, 8FKU|1|L3|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKU|1|L3|C|196
8FKU|1|L3|A|197
8FKU|1|L3|A|198
8FKU|1|L3|G|199
*
8FKU|1|L3|C|215
8FKU|1|L3|C|216
8FKU|1|L3|C|217
8FKU|1|L3|A|218
8FKU|1|L3|G|219
8FKU|1|L3|C|220
8FKU|1|L3|C|221
8FKU|1|L3|C|222
8FKU|1|L3|G|223
8FKU|1|L3|U|224
8FKU|1|L3|G|225
8FKU|1|L3|G|226
8FKU|1|L3|A|227
8FKU|1|L3|C|228
*
8FKU|1|L3|G|240
8FKU|1|L3|G|241
8FKU|1|L3|U|242
8FKU|1|L3|A|243
8FKU|1|L3|G|244

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4

Chain SZ

Nucleolar protein 16