J3_8FKV_004

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGA*UUAUCC*GGUGUCAGAAA

Length

20 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKV|1|L3|U|3921
8FKV|1|L3|G|3922
8FKV|1|L3|A|3923
*
8FKV|1|L3|U|4188
8FKV|1|L3|U|4189
8FKV|1|L3|A|4339
8FKV|1|L3|U|4340
8FKV|1|L3|C|4341
8FKV|1|L3|C|4342
*
8FKV|1|L3|G|4370
8FKV|1|L3|G|4371
8FKV|1|L3|U|4372
8FKV|1|L3|G|4373
8FKV|1|L3|U|4374
8FKV|1|L3|C|4375
8FKV|1|L3|A|4376
8FKV|1|L3|G|4377
8FKV|1|L3|A|4378
8FKV|1|L3|A|4379
8FKV|1|L3|A|4380

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NH

60S ribosome subunit biogenesis protein NIP7 homolog

Chain ST

Ribosome biogenesis regulatory protein homolog